Softwares

GGL-PPI
Software

Geometric Graph Learning for Protein–Protein Interactions (GGL-PPI) integrates geometric graph representation and machine learning to forecast mutation-induced binding free energy changes.

Geometric Graph Learning Protein-Protein Interactions Mutation
GGL-ETA-Score
Software

A multiscale geometric graph-learning scoring function that uses extended atom-type features to model protein–ligand interactions and predict binding affinities with high accuracy.

Geometric Graph Learning Extended Atom-Type Features
EISA-Score
Software

Algebraic surface–area–based scoring method that quantifies element-specific protein–ligand interactions for accurate binding affinity prediction and ranking.

Interactive Surface Modeling Binding Affinity Prediction
AGL-Score
Web Server

Online server for algebraic graph theory based protein-ligand binding scoring, ranking, docking and screening.

Spectral Graph-based Modeling Pose Ranking Virtual Screening
DG-GL
Web Server

Online server for differential geometry based geometric data analysis of molecular datasets.

Curvature Representation Molecular Property Prediction
RI-Score
Web Server

Online server for geometric graph theory or rigidity index (RI) based scoring function for protein ligand binding affinity prediction.

Graph-based Modeling Binding Affinity Prediction
FRI-Score
Web Server

Online server for the flexibility analysis of biomolecules based on flexibility and rigidity index.

Graph-based Modeling Protein Flexibility